Cognitive Foundations of Natural History: Towards an Anthropology of Science. Cambridge University Press, 1990, 1993

Folkbiology, MIT Press, 1999

In Gods We Trust: The Evolutionary Landscape of Religion, Oxford University Press, 2002, 2004

Plants of the Peten Itza’ Maya, Plantas de los Maya Itza’ del Peten, University of Michigan Museum Publications, 2004

The Native Mind and the Cultural Construction of Nature, MIT Press, March 2008

Au nom du Seigneur: La religion au crible de l’évolution, Odile Jacob, Paris, 2009

Values, Empathy, and Fairness Across Social Barriers, Eds.Scott Atran, Arcadi Navarro, Kevin Ochsner, Adolf Tobeña, and Oscar Vilarroya, New York: John Wiley, 2009

ITZA’: Memorias Mayas, X. Lois, V. Vapnarsky, Ch. Freger, S. Atran, Universidad Nacional Autonoma de Mexico, 2010

Talking to the Enemy: Faith, Brotherhood, and the (Un)Making of Terrorists, Ecco Press /HarperCollins, 2010

Talking to the Enemy: Violent Extremism, Sacred Values, and What it Means to Be human, Allen Lane / Penguin, 2010