Publications

Preprints and Articles in Press

  • J.D. Karslake, E.D. Donarski, S.A. Shelby, L.M. Demey, V.J. DiRita, S.L. Veatch and J.S. Biteen, “SMAUG: Analyzing single-molecule tracks with nonparametric Bayesian statistics,” Methods, in press (2020). DOI; Accompanying code on Github
  • A.A. Rangarajan, N.M. Koropatkin and J.S. Biteen, “Nutrient-dependent morphological variability of Bacteroides thetaiotaomicron,” Microbiology, in press (2020). DOI
  • S.J. Budiardjo, et al., “Colicin E1 Fragments Potentiate Antibiotics by Plugging TolC,” under review. Preprint on bioRxiv

Publications

  • H.E. Chia, T. Zuo, N.M. Koropatkin, E.N.G. Marsh and J.S. Biteen, “Imaging living obligate anaerobic bacteria with bilin-binding fluorescent proteins,” Current Research in Microbial Sciences, 1 1-6 (2020). DOI
  • N. Al-Husini, et al., “BR-bodies provide selectively permeable condensates that stimulate mRNA decay and prevent release of decay intermediates,” Molecular Cell, 78 670-682 (2020). DOI
  • S.A. Lee and J.S. Biteen, “Spectral Reshaping of Single Dye Molecules Coupled to Single Plasmonic Nanoparticles,” Journal of Physical Chemistry Letters, 10 5764-5769 (2019). DOI
  • T. Zuo, H.J. Goldwyn, B.P. Isaacoff, D.J. Masiello* and J.S. Biteen*, “Rotation of Single-Molecule Emission Polarization by Plasmonic Nanorods,” Journal of Physical Chemistry Letters, 10 5047-5054 (2019). DOI
  • H.E. Chia, E.N.G. Marsh, and J.S. Biteen, “Extending Fluorescence Microscopy into Anaerobic Environments,” Current Opinion in Chemical Biology, 51 98-104 (2019). DOI
  • B.P. Isaacoff, Y. Li, S.A. Lee and J.S. Biteen, “SMALL-LABS: An algorithm for measuring single-molecule intensity and position in the presence of obscuring backgrounds,” Biophysical Journal, 116 975-982 (2019). DOI. Accompanying code on Github.
  • Y. Li, Z. Chen, L.A. Matthews, L.A. Simmons* and J.S. Biteen*, “Dynamic Exchange of Two Essential DNA Polymerases during Replication and after Fork Arrest,” Biophysical Journal, 116 684-693 (2019). DOI
    *Cover Art, BPS Blog Post
  • H.L. Klein, et al., “Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes,” Microbial Cell, 6 65-101 (2019). DOI
  • D.A. Hinton, et al., “Mapping Forbidden Emission to Structure in Self-Assembled Organic Nanoparticles,” Journal of the American Chemical Society, 140 15827-15841 (2018). DOI
  • S.A. Lee and J.S. Biteen, “Interplay of Nanoparticle Resonance Frequency and Array Surface Coverage in Live-Cell Plasmon-Enhanced Single-Molecule Imaging,” Journal of Physical Chemistry C, 122 5705-5709 (2018). DOI
  • H.H. Tuson, M.H. Foley, N.M. Koropatkin* and J.S. Biteen*, “The Starch Utilization System Assembles around Stationary Starch-Binding Proteins,” Biophysical Journal, 115 242-250 (2018). DOI
  • Y. Li, J.W. Schroeder, L.A. Simmons, and J.S. Biteen, “Visualizing bacterial DNA replication and repair with molecular resolution,” Current Opinion in Microbiology, 43 38-45 (2018). DOI
  • B. Fu, B.P. Isaacoff, and J.S. Biteen, “Super-Resolving the Actual Position of Single Fluorescent Molecules Coupled to a Plasmonic Nanoantenna,” ACS Nano 11 8978-8987 (2017). DOI
  • J.S. Biteen and K.A. Willets, “Introduction: Super-Resolution and Single-Molecule Imaging,” Chemical Reviews, 117 7241-7243 (2017). DOI
  • D.J. Rowland and J.S. Biteen, “Measuring molecular motions inside single cells with improved analysis of single-particle trajectories,” Chemical Physics Letters, 674 173-178 (2017). DOI. Accompanying code on Github.
    * Chemical Physical Letters Frontiers Article
  • Y. Liao, Y. Li, J.W. Schroeder, L.A. Simmons* and J.S. Biteen*, “Single-molecule DNA polymerase dynamics at a bacterial replisome in live cells,” Biophysical Journal, 111 2562-2569 (2016). DOI
    * Included in Biophysical Journal Best of 2016
  • E.A. Wertz, B.P. Isaacoff and J.S. Biteen, “Wavelength-dependent super-resolution images of dye molecules coupled to plasmonic nanotriangles,” ACS Photonics, 3 1733-1740 (2016). DOI
  • S.A. Lee, A. Ponjavic, C. Siv, S.F. Lee and J.S. Biteen, “Nanoscopic Cellular Imaging: Confinement Broadens Understanding,” ACS Nano, 10 8143-8153 (2016). DOI
  • J.D. Flynn, B.L. Haas and J.S. Biteen, “Plasmon-Enhanced Fluorescence from Single Proteins in Living Bacteria,” Journal of Physical Chemistry C, 120 20512-20517 (2016). DOI
  • H.H. Tuson, A. Aliaj, E.R. Brandes, L.A. Simmons and J.S. Biteen, “Addressing the Requirements of High Sensitivity Single-Molecule Imaging of Low-Copy Number Proteins in Bacteria,” ChemPhysChem, 17 1435-1440 (2016). DOI
  • D.J. Rowland, H.H. Tuson and J.S. Biteen, “Resolving fast, confined diffusion in bacteria with image correlation spectroscopy,” Biophysical Journal, 110 2241-2251 (2016). DOI
  • J.S. Biteen, et al., “Tools for the Microbiome: Nano and Beyond.” ACS Nano, 10 6-37 (2016). DOI
    * Highlighted as an ACS Editors’ Choice
    * Most read paper of the year 2016 at ACS Nano 
  • J.S. Lenhart, M.C. Pillon, A. Guarné*, J.S. Biteen* and L.A. Simmons*, “Mismatch repair in Gram-positive bacteria,” Research in Microbiology, 167 4-12 (2016). DOI
  • Y. Liao, J.W. Schroeder, B. Gao, L.A. Simmons* and J.S. Biteen*, “Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair,” Proceedings of the National Academy of Sciences USA, 112 E6898-E6906 (2015). DOI
    Highlighted by a PNAS Commentary HERE!
  • A.P. Alivisatos, M.J. Blaser, E.L. Brodie, M. Chun, J.L. Dangl, T.J. Donohue, P.C. Dorrestein, J.A. Gilbert, J.L. Green, J.K. Jansson, R. Knight, M.E. Maxon, M.J. McFall-Ngai, J.F. Miller, K.S. Pollard, E.G. Ruby, S.A. Taha, Unified Microbiome Initiative Consortium*, “A unified initiative to harness Earth’s microbiomes.” Science, 350 507-508 (2015). DOI
    Julie S. Biteen is a member of the Unified Microbiome Initiative Consortium.
  • B. Fu, J.D. Flynn, B.P. Isaacoff, D.J. Rowland and J.S. Biteen, “Super-resolving the distance-dependent plasmon-enhanced fluorescence of single dye and fluorescent protein molecules.” Journal of Physical Chemistry C, 119 19350-19358 (2015). DOI
  • E. Wertz, B.P. Isaacoff, J.D. Flynn and J.S. Biteen, “Single-Molecule Super-Resolution Microscopy Reveals How Light Couples to a Plasmonic Nanoantenna on the Nanometer Scale.” Nano Letters, 15 2662-2670 (2015). DOI
  • B.L. Haas, J.S. Matson, V.J. DiRita* and J.S. Biteen*, “Single-molecule tracking in live Vibrio cholerae reveals that ToxR recruits the membrane-bound virulence regulator TcpP to the toxT promoter.” Molecular Microbiology, 96 4-13 (2015). DOI
    Highlighted by a MicroCommentary HERE!
  • H.H. Tuson and J.S. Biteen, “Unveiling the Inner Workings of Live Bacteria Using Super-Resolution Microscopy.” Analytical Chemistry, 87 42-63 (2015). DOI
  • T. Hu, B.P. Isaacoff, J.H. Bahng, C. Hao, Y. Zhou, J. Zhu, X. Li, Z. Wang, S. Liu, C. Xu, J.S. Biteen* and N.A. Kotov*, “Self-Organization of Plasmonic and Excitonic Nanoparticles into Resonant Chiral Supraparticle Assemblies.” Nano Letters, 14 6799-6810 (2014). DOI
  • K.S. Karunatilaka, E.A. Cameron, E.C. Martens, N.M. Koropatkin and J.S. Biteen, “Superresolution Imaging Captures Carbohydrate Utilization Dynamics in Human Gut Symbionts.” mBio, 5 e02172-14 (2014). DOI
  • B.L. Haas, J.S. Matson, V.J. Dirita and J.S. Biteen, “Imaging live cells at the nanometer-scale with single-molecule microscopy: Obstacles and achievements in experimental optimization for microbiology.” Molecules, 19 12116-12149 (2014). DOI
  • J.E. Donehue, E. Wertz, C.N. Talicska and J.S. Biteen, “Plasmon-Enhanced Brightness and Photostability from Single Fluorescent Proteins Coupled to Gold Nanorods.” Journal of Physical Chemistry C, 118 15027-15035 (2014). DOI
  • D.J. Rowland and J.S. Biteen, “Top-Hat and Asymmetric Gaussian-Based Fitting Functions for Quantifying Directional Single-Molecule Motion.” ChemPhysChem, 15 712-720 (2014). DOI
  • J.S. Biteen, “Intracellular Dynamics of Bacterial Proteins Are Revealed by Super-resolution Microscopy.” Biophysical Journal, 105 1547-1548 (2013). DOI
  • J.E. Donehue, B.L. Haas, E. Wertz, C.N. Talicska and J.S. Biteen, “Plasmon-enhanced emission from single fluorescent proteins.” SPIE Proceedings, 8597 85970J (2013). DOI
  • E. Wertz, J.E. Donehue, C. Hayes and J.S. Biteen, “Plasmon-enhanced fluorescence intensities and rates permit super-resolution imaging of enhanced local fields.” SPIE Proceedings, 8590 85900U (2013). DOI
  • K.S. Karunatilaka, B.R. Coupland, E.A. Cameron, E.C. Martens, N.M. Koropatkin and J.S. Biteen, “Single-Molecule Imaging Can Be Achieved in Live Obligate Anaerobic Bacteria.” SPIE Proceedings, 8590 85900K (2013). DOI
  • M.C. Cheng, A.T. Leske, T. Matsuoka, B.C. Kim, J. Lee, M.A. Burns, S. Takayama and J.S. Biteen, “Super-Resolution Imaging of PDMS Nanochannels by Single-Molecule Micelle-Assisted Blink Microscopy.” Journal of Physical Chemistry B, 117 4406-4411 (2013). DOI
  • J.S. Biteen, “Live-Cell Single-Molecule Imaging.” Encyclopedia of Biophysics, vol. 1, G. C. K. Roberts (ed.), Springer (Heidelberg, 2013). ISBN: 978-3-642-16711-9.
  • J.S. Biteen, “Photoactivated Localization Microscopy (PALM).” Encyclopedia of Biophysics, vol. 1, G. C. K. Roberts (ed.), Springer (Heidelberg, 2013). ISBN: 978-3-642-16711-9.
  • Y. Liao, S.K. Yang, K. Koh, A.J. Matzger and J.S. Biteen, “Heterogeneous Single-Molecule Diffusion in One-, Two-, and Three-Dimensional Microporous Coordination Polymers: Directional, Trapped, and Immobile Guests.” Nano Letters, 12 3080-3085 (2012). DOI
  • J.S. Biteen, “Extending the tools of single-molecule fluorescence imaging to real problems in microbiology.” Molecular Microbiology, 85 1-4 (2012). DOI
  • J.S. Biteen, “Moving Toward the Future of Single-Molecule-Based Super-Resolution Imaging.” Biopolymers, 95 287-289 (2011). DOI

Publications prior to University of Michigan